Open-weight bio-foundation models present a dual-use dilemma. While holding great promise for accelerating scientific research and drug development, they could also enable bad actors to develop more deadly bioweapons. To mitigate the risk posed by these models, current approaches focus on filtering biohazardous data during pre-training. However, the effectiveness of such an approach remains unclear, particularly against determined actors who might fine-tune these models for malicious use. To address this gap, we propose BioRiskEval, a framework to evaluate the robustness of procedures that are intended to reduce the dual-use capabilities of bio-foundation models. BioRiskEval assesses models' virus understanding through three lenses, including sequence modeling, mutational effects prediction, and virulence prediction. Our results show that current filtering practices may not be particularly effective: Excluded knowledge can be rapidly recovered in some cases via fine-tuning, and exhibits broader generalizability in sequence modeling. Furthermore, dual-use signals may already reside in the pretrained representations, and can be elicited via simple linear probing. These findings highlight the challenges of data filtering as a standalone procedure, underscoring the need for further research into robust safety and security strategies for open-weight bio-foundation models.

Data-driven methods for electrocardiogram (ECG) interpretation are rapidly progressing. Large datasets have enabled advances in artificial intelligence (AI) based ECG analysis, yet limitations in annotation quality, size, and scope remain major challenges. Here we present CODE-II, a large-scale real-world dataset of 2,735,269 12-lead ECGs from 2,093,807 adult patients collected by the Telehealth Network of Minas Gerais (TNMG), Brazil. Each exam was annotated using standardized diagnostic criteria and reviewed by cardiologists. A defining feature of CODE-II is a set of 66 clinically meaningful diagnostic classes, developed with cardiologist input and routinely used in telehealth practice. We additionally provide an open available subset: CODE-II-open, a public subset of 15,000 patients, and the CODE-II-test, a non-overlapping set of 8,475 exams reviewed by multiple cardiologists for blinded evaluation. A neural network pre-trained on CODE-II achieved superior transfer performance on external benchmarks (PTB-XL and CPSC 2018) and outperformed alternatives trained on larger datasets.

Designing protein sequences of both high fitness and novelty is a challenging task in data-efficient protein engineering. Exploration beyond wild-type neighborhoods often leads to biologically implausible sequences or relies on surrogate models that lose fidelity in novel regions. Here, we propose ProSpero, an active learning framework in which a frozen pre-trained generative model is guided by a surrogate updated from oracle feedback. By integrating fitness-relevant residue selection with biologically-constrained Sequential Monte Carlo sampling, our approach enables exploration beyond wild-type neighborhoods while preserving biological plausibility. We show that our framework remains effective even when the surrogate is misspecified. ProSpero consistently outperforms or matches existing methods across diverse protein engineering tasks, retrieving sequences of both high fitness and novelty.

Abstract-- Robust 6D pose estimation of novel objects under challenging illumination remains a significant challenge, often requiring a trade-off between accurate initial pose estimation and efficient real-time tracking. We present a unified framework explicitly designed for efficient execution on edge devices, which synergizes a robust initial estimation module with a fast motion-based tracker . The key to our approach is a shared, lighting-invariant color-pair feature representation that forms a consistent foundation for both stages. For initial estimation, this feature facilitates robust registration between the live RGB-D view and the object's 3D mesh. Extensive experiments on benchmark datasets demonstrate that our integrated approach is both effective and robust, providing competitive pose estimation accuracy while maintaining high-fidelity tracking even through abrupt pose changes. Estimation of an object's six-degree-of-freedom (6D) pose, which involves determining its 3D rotation and 3D translation relative to a camera, is a fundamental task in computer vision and robotics [1]. Accurate 6D pose information is crucial for a variety of applications, ranging from robotic manipulation and grasping in industrial and household environments to immersive experiences in augmented and mixed reality. The ability of an autonomous system to precisely locate and determine the orientation of objects is a key prerequisite for meaningful physical interaction. Furthermore, in dynamic scenarios, this capability must extend beyond single-frame estimation to continuous, real-time tracking, providing the temporal coherence necessary for tasks such as closed-loop robotic control. Historically, pose estimation has focused on instance-level methods, which require costly, object-specific training and thus cannot generalize to new objects. While category-level approaches can handle unseen instances within a known class, they still fail to address entirely novel categories.

End-to-end robot manipulation policies offer significant potential for enabling embodied agents to understand and interact with the world. Unlike traditional modular pipelines, end-to-end learning mitigates key limitations such as information loss between modules and feature misalignment caused by isolated optimization targets. Despite these advantages, existing end-to-end neural networks for robotic manipulation--including those based on large VLM/VLA models--remain insufficiently performant for large-scale practical deployment. In this paper, we take a step towards an end-to-end manipulation policy that is generalizable, accurate and reliable. To achieve this goal, we propose a novel Chain of Moving Oriented Keypoints (CoMOK) formulation for robotic manipulation. Our formulation is used as the action representation of a neural policy, which can be trained in an end-to-end fashion. Such an action representation is general, as it extends the standard end-effector pose action representation and supports a diverse set of manipulation tasks in a unified manner. The oriented keypoint in our method enables natural generalization to objects with different shapes and sizes, while achieving sub-centimeter accuracy. Moreover, our formulation can easily handle multi-stage tasks, multi-modal robot behaviors, and deformable objects. Extensive simulated and hardware experiments demonstrate the effectiveness of our method.

Despite progress in AI-based plant diagnostics, sugarcane farmers in low-resource regions remain vulnerable to leaf diseases due to the lack of scalable, efficient, and interpretable tools. Many deep learning models fail to generalize under real-world conditions and require substantial computational resources, limiting their use in resource-constrained regions. In this paper, we present SugarcaneLD-BD, a curated dataset for sugarcane leaf-disease classification; SugarcaneShuffleNet, an optimized lightweight model for rapid on-device diagnosis; and SugarcaneAI, a Progressive Web Application for field deployment. SugarcaneLD-BD contains 638 curated images across five classes, including four major sugarcane diseases, collected in Bangladesh under diverse field conditions and verified by expert pathologists. To enhance diversity, we combined SugarcaneLD-BD with two additional datasets, yielding a larger and more representative corpus. Our optimized model, SugarcaneShuffleNet, offers the best trade-off between speed and accuracy for real-time, on-device diagnosis. This 9.26 MB model achieved 98.02% accuracy, an F1-score of 0.98, and an average inference time of 4.14 ms per image. For comparison, we fine-tuned five other lightweight convolutional neural networks: MnasNet, EdgeNeXt, EfficientNet-Lite, MobileNet, and SqueezeNet via transfer learning and Bayesian optimization. MnasNet and EdgeNeXt achieved comparable accuracy to SugarcaneShuffleNet, but required significantly more parameters, memory, and computation, limiting their suitability for low-resource deployment. We integrate SugarcaneShuffleNet into SugarcaneAI, delivering Grad-CAM-based explanations in the field. Together, these contributions offer a diverse benchmark, efficient models for low-resource environments, and a practical tool for sugarcane disease classification. It spans varied lighting, backgrounds and devices used on-farm

The brain-computer interface (BCI) establishes a non-muscle channel that enables direct communication between the human body and an external device. Electroencephalography (EEG) is a popular non-invasive technique for recording brain signals. It is critical to process and comprehend the hidden patterns linked to a specific cognitive or motor task, for instance, measured through the motor imagery brain-computer interface (MI-BCI). A significant challenge is presented by classifying motor imagery-based electroencephalogram (MI-EEG) tasks, given that EEG signals exhibit nonstationarity, time-variance, and individual diversity. Obtaining good classification accuracy is also very difficult due to the growing number of classes and the natural variability among individuals. To overcome these issues, this paper proposes a novel method for classifying EEG motor imagery signals that extracts features efficiently with Minimally Random Convolutional Kernel Transform (MiniRocket), a linear classifier then uses the extracted features for activity recognition. Furthermore, a novel deep learning based on Convolutional Neural Network (CNN) and Long Short Term Memory (LSTM) architecture to serve as a baseline was proposed and demonstrated that classification via MiniRocket's features achieves higher performance than the best deep learning models at lower computational cost. The PhysioNet dataset was used to evaluate the performance of the proposed approaches. The proposed models achieved mean accuracy values of 98.63% and 98.06% for the MiniRocket and CNN-LSTM, respectively. The findings demonstrate that the proposed approach can significantly enhance motor imagery EEG accuracy and provide new insights into the feature extraction and classification of MI-EEG.

Protein language models (PLMs) learn probability distributions over natural protein sequences. By learning from hundreds of millions of natural protein sequences, protein understanding and design capabilities emerge. Recent works have shown that scaling these models improves structure prediction, but does not seem to improve mutation understanding and representation quality for protein function prediction. We introduce PoET-2, a multimodal, retrieval-augmented protein foundation model that incorporates in-context learning of family-specific evolutionary constraints with optional structure conditioning to learn generative distributions over protein sequences. PoET-2 uses a hierarchical transformer encoder that is equivariant to sequence context ordering and a dual decoder architecture with both causal and masked language modeling objectives, allowing PoET-2 to operate in both fully generative and bidirectional representation learning modes. PoET-2 achieves state-of-the-art performance on zero-shot variant effect prediction, excelling at scoring variants with multiple mutations and challenging indel mutations. In supervised settings, PoET-2 embeddings outperform previous methods for learning sequence-function relationships, especially with small datasets. This work highlights the benefits of combining retrieval augmentation with multimodal, family-centric modeling for advancing protein foundation models.

We present VizGenie, a self-improving, agentic framework that advances scientific visualization through large language model (LLM) by orchestrating of a collection of domain-specific and dynamically generated modules. Users initially access core functionalities--such as threshold-based filtering, slice extraction, and statistical analysis--through pre-existing tools. For tasks beyond this baseline, VizGenie autonomously employs LLMs to generate new visualization scripts (e.g., VTK Python code), expanding its capabilities on-demand. Each generated script undergoes automated backend validation and is seamlessly integrated upon successful testing, continuously enhancing the system's adaptability and robustness. A distinctive feature of VizGenie is its intuitive natural language interface, allowing users to issue high-level feature-based queries (e.g., ``visualize the skull"). The system leverages image-based analysis and visual question answering (VQA) via fine-tuned vision models to interpret these queries precisely, bridging domain expertise and technical implementation. Additionally, users can interactively query generated visualizations through VQA, facilitating deeper exploration. Reliability and reproducibility are further strengthened by Retrieval-Augmented Generation (RAG), providing context-driven responses while maintaining comprehensive provenance records. Evaluations on complex volumetric datasets demonstrate significant reductions in cognitive overhead for iterative visualization tasks. By integrating curated domain-specific tools with LLM-driven flexibility, VizGenie not only accelerates insight generation but also establishes a sustainable, continuously evolving visualization practice. The resulting platform dynamically learns from user interactions, consistently enhancing support for feature-centric exploration and reproducible research in scientific visualization.

Robotics has made remarkable hardware strides-from DARPA's Urban and Robotics Challenges to the first humanoid-robot kickboxing tournament-yet commercial autonomy still lags behind progress in machine learning. A major bottleneck is software: current robot stacks demand steep learning curves, low-level C/C++ expertise, fragmented tooling, and intricate hardware integration, in stark contrast to the Python-centric, well-documented ecosystems that propelled modern AI. We introduce ARK, an open-source, Python-first robotics framework designed to close that gap. ARK presents a Gym-style environment interface that allows users to collect data, preprocess it, and train policies using state-of-the-art imitation-learning algorithms (e.g., ACT, Diffusion Policy) while seamlessly toggling between high-fidelity simulation and physical robots. A lightweight client-server architecture provides networked publisher-subscriber communication, and optional C/C++ bindings ensure real-time performance when needed. ARK ships with reusable modules for control, SLAM, motion planning, system identification, and visualization, along with native ROS interoperability. Comprehensive documentation and case studies-from manipulation to mobile navigation-demonstrate rapid prototyping, effortless hardware swapping, and end-to-end pipelines that rival the convenience of mainstream machine-learning workflows. By unifying robotics and AI practices under a common Python umbrella, ARK lowers entry barriers and accelerates research and commercial deployment of autonomous robots.